PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019672-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 717aa    MW: 77702.4 Da    PI: 6.7866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019672-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16473519455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  AHYPO_019672-RA 473 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 519
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.05E-17465523No hitNo description
SuperFamilySSF474591.57E-20466531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-20466526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13473519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MPLTEFIRML KGKPEVSQGA TTSIDPSSRP DSDCVELVWE NGQIMMQGKA RKNPISNNFQ  60
TFGSKPQDDG RVSNTSKMTK FGQMNSEMAE FPLCVPSCEM GLDQDVDLVP WLSYPMDQPL  120
HNDYTPDFLN ELSGVTINDL PSESHLAYRE RITSFHGDGG HDTSMTLKHS HTSKPPSSNV  180
KDNRGGSGEV PQFLPSFQQS VPRSGISDGN NLGNAQKAAS RDSLPNPSPL SDFASLRLHK  240
LKAGQPSTSS GITNFLEFSR PASLSRASHV MVNPSMILEN DDKRCTLSSN NPAKSALVNL  300
DSGCSQKDIV SHNQTIVEPA NANLESFPTK PNPELISTKE SLYREKLAIN QMSPNQACDT  360
SMNKAGIGGD DRIVEPVVAA SSVCSGNSVD RASNEPSRNL KRKCLETADS SSPSDDVRYW  420
ISLQTDLSLQ FCFFVWHDKL NMAYLQENED ESVGARKPVC GQTGSKKSRA AEVHNLSERR  480
RRDRINEKMR ALQELIPNCN KADKASMLDE AIEYLKTLQL QVQILSMGPG LYMQPMLFPP  540
GMQPIHGAHM QHFSPMGLGM GMGMGLGMNM LNMNSGARMV PFLGPHYPIP GIRPPFHGMP  600
GSSLQAFPHP GQGFPMSMQQ PSVPPPKAGN FMKMPSGSSA SGVAGTSNAP HFASSGCAKD  660
ANPQLMPSGV TSTNVNSSLN QATNQASNER TQQSAMSIDQ AQDVKPSEAA NKENNA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477482ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104506.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_019104507.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_019104508.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A0K9RD810.0A0A0K9RD81_SPIOL; Uncharacterized protein
STRINGXP_010674470.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-42phytochrome interacting factor 3