PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019684-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 434aa    MW: 49623.7 Da    PI: 7.424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019684-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13196247155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  AHYPO_019684-RA 196 QRMTHIAVERNRRRQMNEHLNALRSLMPPS---YVQRGDQASIIGGAIDFVKELE 247
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.35E-11194251No hitNo description
SuperFamilySSF474595.23E-17194263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.815195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13196258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-11196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEKLRGPINP CLIAEDLEVG WLEEFINTTG NLKFEDNPYK YNLEEYNYGD NNNNADYYFH  60
NNNFPNLEDK IPFLQMLQSV EIPQQNEDPN FQLLLRLQQH QKLMGYTEIE INHGVNHGLI  120
MDLPVIKSEN DGINQVIMEE TKKCKIKRNN LGKNNNNNNN NNNNNNNNNN VGVIKEKRKR  180
KRTIKPAKNK QEVENQRMTH IAVERNRRRQ MNEHLNALRS LMPPSYVQRG DQASIIGGAI  240
DFVKELEQML QSLEAKKKIR QYEENGDVSM TSTSTTSPSS NMHLNNNGFM ASPSSSSSSQ  300
IQLRNQFHSQ EERKGNGNGG EGMGMRKSNN TNNEEFSAER KSALADIEVV VIQNHVNLKI  360
KCERRNGQLL KAIVAFEDLR LNVLHLNITS LHNLVHYSFN LKIEEDCKLG SADEVARAVH  420
QIFSLINLSP QLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196207RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688515.11e-159PREDICTED: transcription factor bHLH67 isoform X1
TrEMBLA0A0K9RJ711e-157A0A0K9RJ71_SPIOL; Uncharacterized protein
STRINGXP_010688515.11e-159(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-48bHLH family protein