PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019734-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family RAV
Protein Properties Length: 238aa    MW: 27827.2 Da    PI: 9.9571
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019734-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-114087255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGV   + +grW A+    ++n+  kr+++g+f+  + Aa a++ a  +++g
  AHYPO_019734-RA 40 KYKGVVPQP-NGRWGAQ---LYQNN--KRVWIGTFDCQDLAAYAYDLAVIRFRG 87
                     89***9888.8******...66664..**********************99998 PP
2B368.49.7e-22157232173
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkang 73 
                      f+kvltpsdv+k++rlv+pk++ae++  ++ + ++++l +ed +  + W++k++y+k+s+ yvltkGW eFvk++g
  AHYPO_019734-RA 157 FEKVLTPSDVGKLHRLVIPKHYAENYlpKMCEVGGMMLCFEDkLMDKMWRLKYCYWKSSQNYVLTKGWGEFVKDKG 232
                      99*********************999*9888889********6677****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-174095IPR001471AP2/ERF domain
PfamPF008472.1E-84087IPR001471AP2/ERF domain
PROSITE profilePS5103219.0064095IPR001471AP2/ERF domain
CDDcd000186.17E-204096No hitNo description
SuperFamilySSF541711.5E-154096IPR016177DNA-binding domain
SMARTSM003801.3E-2240101IPR001471AP2/ERF domain
PRINTSPR003672.0E-64152IPR001471AP2/ERF domain
PRINTSPR003672.0E-67797IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-26151232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-21155232No hitNo description
SuperFamilySSF1019364.58E-22156232IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-18157232IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348157237IPR003340B3 DNA binding domain
SMARTSM010195.9E-5157237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDWDPYYSSP TISCTSSSSC EPPKIHPIKP INTKKLLPIK YKGVVPQPNG RWGAQLYQNN  60
KRVWIGTFDC QDLAAYAYDL AVIRFRGQQA ITNFPIWKYS NNLHLDFLSS HSKIRVIDML  120
RNQTYQDELV RFKRSRFAKN RARRAAQVAE HEWDRLFEKV LTPSDVGKLH RLVIPKHYAE  180
NYLPKMCEVG GMMLCFEDKL MDKMWRLKYC YWKSSQNYVL TKGWGEFVKD KGGFALI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-261542311190DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679708.11e-93PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9ZWM93e-67RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A078J5187e-68A0A078J518_BRANA; BnaCnng37790D protein
STRINGXP_010679708.15e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-68related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]