PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019742-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 533aa    MW: 57984.7 Da    PI: 9.0513
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019742-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.37.7e-25211255145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  AHYPO_019742-RA 211 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 255
                      79****************************************985 PP
2QLQ59.31.1e-20141177137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      ++FT+aQ+ +L++Q+ +yKyL an+PvP++Ll +i+k
  AHYPO_019742-RA 141 GPFTPAQWIELEHQAIIYKYLTANVPVPANLLIPIRK 177
                      59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-11141177IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.3E-15142176IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.472142177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954211255IPR014977WRC domain
PfamPF088793.4E-21212254IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDFCLVGVEG LVLGQNVSSS ENQQVLEGKP RCNNGSGFIK QQRSDPFGDD ENRNSKMVKR  60
DELLGLRYDN VHPKQQMLSF SSSTKPQVSY PTAKDLGFDK NTQNHVLSYF QQSPSYTRNI  120
TGYNSGNLNG SMHGSFTGIR GPFTPAQWIE LEHQAIIYKY LTANVPVPAN LLIPIRKALS  180
SSGFPGFSIG SYPAHSYGWG PFHLGFSGST DPEPGRCRRT DGKKWRCSRD AVPDQKYCER  240
HINRGRHRSR KPVEGQTGQA LSGPTSTKVV PAMSASMSSL VTSSAGASNS VTIAHQHQFK  300
GLQPANNRIH DNLGLSVLPP TLNLKTNDSE ISIGKQYISF GESSRSEFGL VSTDSLLNPT  360
QKSAYLGFKS YDTPILEFNA RQTQDQYPLR HFMDVWPKDN ANRSGIPWSE DLKSDLTRLS  420
MSIPMSKNDF LSSTSDQEKT TVSPLMLSRE LAVGDTGVKH NAGIPITWGN SMGGPLGEVL  480
NNTSNVKSAL NLMGDGCEWS PRLGSSPTGV LQSSTFVSLS NSSSAGSPTG EN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6989865e-46JN698986.1 Brassica rapa subsp. pekinensis growth-regulating factor 1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679671.10.0PREDICTED: growth-regulating factor 2
TrEMBLA0A0K9QDT80.0A0A0K9QDT8_SPIOL; Uncharacterized protein
STRINGXP_010679671.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-93growth-regulating factor 2