PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019796-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 167aa    MW: 18948.9 Da    PI: 9.6913
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019796-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-092650226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     kt++C++f+  G C yG +C FaHg
  AHYPO_019796-RA 26 KTKICKTFQIKGSCMYGHNCVFAHG 50
                     8***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-92255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-132256IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-52451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3662452IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-62650IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-65687IPR000571Zinc finger, CCCH-type
SMARTSM003561.25984IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.6815985IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-55986IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MENQMLNFHN RMSTTAKSNG IHPMIKTKIC KTFQIKGSCM YGHNCVFAHG LGDMRNMNMI  60
KGKLCKYSWG KCPYGGNCIF LHKQSETYKN YEENRSSIRI QSARTCDYGS KCNSAIDSET  120
QKVKDTLVSD AEKASVPKQK LQAKASLLKW NKSKKIVDIY ADWIEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-10C3H family protein