PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019822-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 377aa    MW: 41164.9 Da    PI: 5.2663
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019822-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.1e-082465439
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     r C+ ++   + l+C+++  +lC  C  ++H g      H++
  AHYPO_019822-RA 24 RPCDVCNAASALLYCRTDAAFLCGPCDAKIHTGvgvvnrHER 65
                     68*****************************87888888876 PP
2zf-B_box261.9e-0866111342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++   C+ +   lC +C   +H+       H+++p+
  AHYPO_019822-RA  66 VWVCEVCEQAPAVVTCKADAAALCSSCDHDIHSAnplarrHERIPV 111
                      689*****************************66889999999885 PP
3CCT69.11.2e-23311354144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++
  AHYPO_019822-RA 311 REARVLRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRT 354
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.7E-82168IPR000315B-box-type zinc finger
CDDcd000216.87E-92468No hitNo description
PfamPF006433.9E-62465IPR000315B-box-type zinc finger
PROSITE profilePS501199.0152668IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6864111IPR000315B-box-type zinc finger
PfamPF006431.1E-665111IPR000315B-box-type zinc finger
CDDcd000216.42E-867111No hitNo description
SMARTSM003361.3E-769111IPR000315B-box-type zinc finger
PROSITE profilePS5101716.668311353IPR010402CCT domain
PfamPF062038.3E-18311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MVVTDETNNI KGLLSGWGLS LTGRPCDVCN AASALLYCRT DAAFLCGPCD AKIHTGVGVV  60
NRHERVWVCE VCEQAPAVVT CKADAAALCS SCDHDIHSAN PLARRHERIP VTPFLDSPVD  120
AVIARSTAAS AAASAFIVPD ELDAVPAPIL LNDAVEEDAD AWLIPNPSSS FLYNDSDILN  180
FSYENQNFVK PQQQEFKPIV DDNRPYAFTD SVVPTQSQGN SKINNTFTIG TDSLFENCFN  240
IDFTQPNKLN KKNTNTFSLF NYSSQSVSSS DIGVVPDTNT NSMSSEVSYS FAKSSGCDNG  300
ASSNGGLVMD REARVLRYRE KRKNRKFQKT IRYASRKAYA ETRPRIKGRF AKRTENIETS  360
ELDFAVDTGY GVVPAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856630.11e-171zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A0K9QX531e-170A0A0K9QX53_SPIOL; Uncharacterized protein
STRINGXP_010688513.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-80CONSTANS-like 5