PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019832-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 378aa    MW: 42930.5 Da    PI: 5.0131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019832-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.5e-14216263254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r++h ++Er RRd++N++f  Lr ++P        K++Ka+ L  Av YI++L
  AHYPO_019832-RA 216 RTSHVKAERERRDKLNQKFYALRAVVPYV-----SKMDKASLLSDAVSYINEL 263
                      99**************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-1092186IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.83E-18214285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.52214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-18216282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-14216268No hitNo description
PfamPF000101.5E-11216263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-14220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEHNKSPSSS PEWLTPNQNF DFDFCFSTLS IHQERLKSIV ESKPEWFYAI LWQLTSNMMT  60
NNNSNNCRVL ACSEGYIKTS ITDNNTNNGA FGEWFYNSSF TKLLDIDDNN KAIGQAMNSG  120
RVYVWLMSTT DGNINYIGCE RANDAMLHQV RTIVFIPIIS GEIIEIGSLE YICEDSSVIE  180
FIHSIFSINS NTSNSNSNIS TTYPKKNERK NTNHERTSHV KAERERRDKL NQKFYALRAV  240
VPYVSKMDKA SLLSDAVSYI NELKSQISSL EEKVRVINEQ AQVVSTSCDD WPIQMEVEVE  300
SVGQEMIIKV KTLGLDYPES RLMNVLKDLC LVVCNATVSN LNQMVFQNVV VTMPAYFDEF  360
ISIQGGLVNI IRQRMQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-21215283574Transcription factor MYC2
5gnj_B5e-21215283574Transcription factor MYC2
5gnj_E5e-21215283574Transcription factor MYC2
5gnj_F5e-21215283574Transcription factor MYC2
5gnj_G5e-21215283574Transcription factor MYC2
5gnj_I5e-21215283574Transcription factor MYC2
5gnj_M5e-21215283574Transcription factor MYC2
5gnj_N5e-21215283574Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855535.11e-112transcription factor bHLH14-like
TrEMBLA0A0K9RQ502e-92A0A0K9RQ50_SPIOL; Uncharacterized protein
STRINGXP_010677037.19e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.15e-36bHLH family protein