PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019834-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 383aa    MW: 43165.8 Da    PI: 6.0763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019834-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13206253254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r +h e+E++RRdr+N++f  Lr ++P       +K++ a+ L  Av+YI +L
  AHYPO_019834-RA 206 RPTHVEAEKQRRDRLNQRFYALRAVVPYV-----TKMDRASLLADAVKYIEEL 253
                      889*************************8.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-1723181IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.221204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16206267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10206253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15206265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-12208258No hitNo description
SMARTSM003531.2E-13210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEDTFLPIDW LNSNPQPDII SFKQQLKSIV QSKLGLFYAL FWQTTSFSTP DLLSCVDGYS  60
ISAVNCPPTL PNLRTRHQET VEIDEIMMSE WFYTNSLTKF IDIKDTNSMI GEVMGLGKHL  120
WLNLTRESLD YSKCERAKEA QQHKIRTLVF VPISSSAIIE IGSIVDIKED RSLLELTSSI  180
FGSTSDCNSF NFTSCTTEIK PSVMSRPTHV EAEKQRRDRL NQRFYALRAV VPYVTKMDRA  240
SLLADAVKYI EELKAKVSAL EEKMKGVSVP RNCTNSAQVQ DVKNCLSSYD SISSGMVKVE  300
VEVKMLGSEV ILRVQSSGLD YAPAKLMNVL RDLKLEVCYA TISNINEVML LNIVLKRPLF  360
NLDECISSQE GLQMILLHKL QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-18209265966Transcription factor MYC2
5gnj_B4e-18209265966Transcription factor MYC2
5gnj_E4e-18209265966Transcription factor MYC2
5gnj_F4e-18209265966Transcription factor MYC2
5gnj_G4e-18209265966Transcription factor MYC2
5gnj_I4e-18209265966Transcription factor MYC2
5gnj_M4e-18209265966Transcription factor MYC2
5gnj_N4e-18209265966Transcription factor MYC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677037.11e-100PREDICTED: transcription factor bHLH14-like
STRINGXP_010677037.13e-99(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-34bHLH family protein