PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019919-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 195aa MW: 20444.2 Da PI: 6.2456

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019919-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.9	1.9e-39	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk++rrkC+++C++apyfp ++p+kfa vhk++Gasn+ kll++l+ reda+ slvyeA+ar+ dPvyG+vg i+ lqq+l+q+++ + AHYPO_019919-RA 11 PCAACKLQRRKCTQECIFAPYFPPDDPNKFATVHKVYGASNIAKLLSELNVGAREDAVISLVYEAQARLLDPVYGCVGQIQVLQQRLKQTQTLV 104 7*****************************************************************************************9877 PP DUF260 95 allke 99 ++k+ AHYPO_019919-RA 105 IAAKK 109 66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.783	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-39	11	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
KSGMSTSLNS PCAACKLQRR KCTQECIFAP YFPPDDPNKF ATVHKVYGAS NIAKLLSELN 60 VGAREDAVIS LVYEAQARLL DPVYGCVGQI QVLQQRLKQT QTLVIAAKKE LATYVGPYMM 120 MHHQYNLSPI MGIPTGIVTG PCLSQGGAVG PELFEAQLQF NEESLGDGGG GGGGGGGGGD 180 GREGEDSSRS TTTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	10	114	10	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	10	114	10	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010687953.1	2e-64	PREDICTED: LOB domain-containing protein 36
Swissprot	Q9FKZ3	6e-56	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A438FB10	1e-60	A0A438FB10_VITVI; LOB domain-containing protein 36
STRING	XP_010687953.1	8e-64	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-58	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	AHYPO_019919-RA

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]