PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019920-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 350aa MW: 38848.8 Da PI: 6.4178

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019920-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.3e-05	310	329	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + + a++L +AveYIk+Lq AHYPO_019920-RA 310 RQTNTADMLDLAVEYIKDLQ 329 44899**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.81E-4	304	333	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-7	308	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-5	309	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDSDFQQHQY QHHFHDFPHQ KQQSTGLTRF RSAPSSYFSS FLDGSSDSIT STDQRRDFSN 60 ARPLSPETET IFARFMASID AENTNSSQKL CNIPENSAVQ TDFAVKVKQE SDIQQQPMMY 120 HSQSKPPLAN QRNSGVKSSM GIQSIPQMKT GFGGGINTNS SSSLARFGVM GGTGNYGGNT 180 QMNFSSGLPS STSELLNQNP NVGSERIFSN STNNDTNYPF PMNSWDDTTV SDNFEDKKPL 240 FCNPNSSENQ SGEAKNCPPV LSHHLSLPKT LPDLSNIENI ENFLQNQDIV TCRIRAKRGC 300 ATHPRSIAER QTNTADMLDL AVEYIKDLQK QVETMIDNRA KCICQKEKT*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDSDFQQHQY QHHFHDFPHQ KQQSTGLTRF RSAPSSYFSS FLDGSSDSIT STDQRRDFSN  60
ARPLSPETET IFARFMASID AENTNSSQKL CNIPENSAVQ TDFAVKVKQE SDIQQQPMMY  120
HSQSKPPLAN QRNSGVKSSM GIQSIPQMKT GFGGGINTNS SSSLARFGVM GGTGNYGGNT  180
QMNFSSGLPS STSELLNQNP NVGSERIFSN STNNDTNYPF PMNSWDDTTV SDNFEDKKPL  240
FCNPNSSENQ SGEAKNCPPV LSHHLSLPKT LPDLSNIENI ENFLQNQDIV TCRIRAKRGC  300
ATHPRSIAER QTNTADMLDL AVEYIKDLQK QVETMIDNRA KCICQKEKT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021772031.1	1e-135	transcription factor bHLH130-like
TrEMBL	A0A0K9S243	7e-98	A0A0K9S243_SPIOL; Uncharacterized protein
STRING	XP_010673593.1	1e-111	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_019920-RA