PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_020001-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

WRKY

Protein Properties

Length: 453aa MW: 50041.2 Da PI: 6.4343

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_020001-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	85.1	6.3e-27	211	269	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++pr+YYrC+s gC+++k+vers dp++ ++tY++ H h+ AHYPO_020001-RA 211 NDKWAWRKYGQKPIKGSPYPRNYYRCSSMkGCKARKQVERSPVDPHIYIVTYTSYHFHS 269 8***********************9988************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-28	197	271	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-24	203	271	IPR003657	WRKY domain
PROSITE profile	PS50811	29.046	205	271	IPR003657	WRKY domain
SMART	SM00774	3.5E-32	210	270	IPR003657	WRKY domain
Pfam	PF03106	9.3E-23	211	268	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MMGESEMNDC WSLIAVVKEC ARKNQLTSQL TNINGISPAT SNSTTTQKPE CSLKNDSQKM 60 FLGEFISDNK SKSNDMLSST VEVAEIYATT TADYNCDILK NEFKDTYKSF LVSDNNNNNN 120 NNNNNNNNNN NNNNNNLNCV ICPTNKIPLV DPSELGCNLL VHQQNSQQAQ QRNVQKQGSS 180 AVGVGQPYTH KKKKFEDRRV VRYTLEDLAT NDKWAWRKYG QKPIKGSPYP RNYYRCSSMK 240 GCKARKQVER SPVDPHIYIV TYTSYHFHSC PPLRHPNGSR LKFTGSNPIP PPEIDSPGTG 300 TIPDPSTPGS GSGSGLSSSN VVNVIDDKED DYSGAHDESF GSGVVDEDKN DYDILIPNAM 360 ADSDLLTGMD HLRDNLNNNT SANYLVRHDK MEVHNGGYDP SLNMEVHVNE NGSGYGIGIG 420 KKYASNPITS AGALDPANSM GQNIWDNGMI KTR

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MMGESEMNDC WSLIAVVKEC ARKNQLTSQL TNINGISPAT SNSTTTQKPE CSLKNDSQKM  60
FLGEFISDNK SKSNDMLSST VEVAEIYATT TADYNCDILK NEFKDTYKSF LVSDNNNNNN  120
NNNNNNNNNN NNNNNNLNCV ICPTNKIPLV DPSELGCNLL VHQQNSQQAQ QRNVQKQGSS  180
AVGVGQPYTH KKKKFEDRRV VRYTLEDLAT NDKWAWRKYG QKPIKGSPYP RNYYRCSSMK  240
GCKARKQVER SPVDPHIYIV TYTSYHFHSC PPLRHPNGSR LKFTGSNPIP PPEIDSPGTG  300
TIPDPSTPGS GSGSGLSSSN VVNVIDDKED DYSGAHDESF GSGVVDEDKN DYDILIPNAM  360
ADSDLLTGMD HLRDNLNNNT SANYLVRHDK MEVHNGGYDP SLNMEVHVNE NGSGYGIGIG  420
KKYASNPITS AGALDPANSM GQNIWDNGMI KTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-17	204	272	9	75	WRKY transcription factor 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	5e-32	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	AHYPO_020001-RA