PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020021-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SRS
Protein Properties Length: 334aa    MW: 36288.9 Da    PI: 8.4262
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020021-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702188.42.7e-581152473154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                      sg+++CqdCGnq+kkdCah RCRtCCksrgfdC thvkstWvpaa+rrerqqqla++++++         +++++        +  ++ ss+ +
  AHYPO_020021-RA 115 SGGMNCQDCGNQSKKDCAHLRCRTCCKSRGFDCPTHVKSTWVPAARRRERQQQLATLQQQQ---------QSPQS-------HI--MR-SSTGA 189
                      6899**************************************************9984433.........22222.......22..22.23334 PP

           DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      +k le+s++P+e++ +a frcv+vs+++d ee++aYqtav+igGh+fkGiLydqG+e+
  AHYPO_020021-RA 190 EKRLEMSNFPAELNRAATFRCVKVSAIEDPEEQFAYQTAVNIGGHIFKGILYDQGPEN 247
                      56789999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-56117246IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-26119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-25198245IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
GEEIYPKGSF EIWQQYVQVH HHHHAPKLQL HQDHHHHHHR HQQHAFLTGE SQPSIVVGPS  60
NRRIFSIDDY HNNNNNNNNN NINNTNTVGV ISSGINSSSS SRSGFRQLSS GGVISGGMNC  120
QDCGNQSKKD CAHLRCRTCC KSRGFDCPTH VKSTWVPAAR RRERQQQLAT LQQQQQSPQS  180
HIMRSSTGAE KRLEMSNFPA ELNRAATFRC VKVSAIEDPE EQFAYQTAVN IGGHIFKGIL  240
YDQGPENRYG GGGSGGGGES SSGGITLQQQ QHQHGVMLPA ATTTSDLMGT VGISGGNGVD  300
PMGNLGTTTT TSVYATPINA FLAGTQFFPP PRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862466.18e-98protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A0K9R9416e-97A0A0K9R941_SPIOL; Uncharacterized protein
STRINGXP_010672367.19e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-52Lateral root primordium (LRP) protein-related