PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020116-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WOX
Protein Properties Length: 323aa    MW: 36836.9 Da    PI: 7.199
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020116-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.8e-173899257
                     T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++R+t+t+eq++ L++l++    r p+a++++ + ++l    +++ ++V++WFqN++a+e++
  AHYPO_020116-RA 38 STRWTPTTEQIKLLKDLYYLqgIRSPTADQIQSICARLrrygKIEGKNVFYWFQNHKARERQ 99
                     58****************94359*************************************97 PP
2Wus_type_Homeobox1116.4e-3637101265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt+eQik+L++ly+ +G+r+P++++iq i a+L++yGkie+kNVfyWFQN+kaRerqk+
    AHYPO_020116-RA  37 SSTRWTPTTEQIKLLKDLYYlQGIRSPTADQIQSICARLRRYGKIEGKNVFYWFQNHKARERQKK 101
                        789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-61899IPR009057Homeodomain-like
SuperFamilySSF466891.92E-1018101IPR009057Homeodomain-like
PROSITE profilePS500719.79934100IPR001356Homeobox domain
SMARTSM003890.001436104IPR001356Homeobox domain
PfamPF000461.5E-143999IPR001356Homeobox domain
CDDcd000861.00E-439101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEFQQQQDEE MINHVGKMSN NTSNNNNNNN NYLCRQSSTR WTPTTEQIKL LKDLYYLQGI  60
RSPTADQIQS ICARLRRYGK IEGKNVFYWF QNHKARERQK KKLTPTSPNN NNNNNNNNFI  120
RNNNNNNNNG NINTFHAKYP CSFNNNPGVS CSSSPAGVIS GGGQLMGSFG YGAVTMETKF  180
RVRGGIPIPN GANQWSNYFN PNNPTSYSNF FIDKVSSNVD HHYPYINHHD HDHDHDHHDH  240
DHYGPQSPHE IQTLPLFPMH NDHHDLDLDL DLDHDQGFYT YKPQSDGCNY TGGYRWSSNV  300
NGGHTSLELS LNSYGFGCYS PN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680087.11e-114PREDICTED: protein WUSCHEL
TrEMBLA0A0K9QL894e-77A0A0K9QL89_SPIOL; Uncharacterized protein
STRINGXP_010680087.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.19e-38WOX family protein