PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020239-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 816aa    MW: 91816.4 Da    PI: 6.0519
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020239-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.2e-2445146199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  AHYPO_020239-RA  45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKKLVAGDSVIFI--WN 134
                      99*****************************96555555..8************************************************..89 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ el+++++r+
  AHYPO_020239-RA 135 EKNELLLGIRRA 146
                      9999*****997 PP
2Auxin_resp114.41e-37171254183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F++++nPras+seFvv++ k++ka++ ++v+vGmRf+m fete+ss rr++Gt++g+sdldpvrWp S Wrs+k
  AHYPO_020239-RA 171 AAHAASTNSRFTIFFNPRASPSEFVVPLVKYVKAIHhTRVTVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPTSYWRSVK 254
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-4930174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-4238160IPR015300DNA-binding pseudobarrel domain
CDDcd100175.12E-2244145No hitNo description
PROSITE profilePS5086312.63345147IPR003340B3 DNA binding domain
PfamPF023623.7E-2245146IPR003340B3 DNA binding domain
SMARTSM010192.2E-2545147IPR003340B3 DNA binding domain
PfamPF065071.4E-32171254IPR010525Auxin response factor
PfamPF023091.9E-6518765IPR033389AUX/IAA domain
SuperFamilySSF542771.05E-6675754No hitNo description
PROSITE profilePS5174522.281680765IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLT LQEKKDVCLL PAELGTPSKQ PTNYFCKTLT ASDTSTHGGF  60
SVPRRAAEKV FPPLDYTQQP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA  120
KKLVAGDSVI FIWNEKNELL LGIRRANRPQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR  180
FTIFFNPRAS PSEFVVPLVK YVKAIHHTRV TVGMRFRMLF ETEESSVRRY MGTITGISDL  240
DPVRWPTSYW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR LKRPWPSGLP  300
SFPVLKDGDM GLNSPFMWLQ RELGDRCMPS LNFQSYGFNP WMQPRLDPTM LGLQPDISQA  360
MMSSVLQDPR GLEKRPNHSL LQFQPNQNVS YQQSSLIQNQ LLQQVKSQKA LSQSFQESQT  420
VAQNQVQGQL LQQQLQNCRQ YDGQQSQQQQ QSTQFEQLSN QLSDQRQDPK VITKMHSFGS  480
SPQSLPTSLE TISSGCPPQL FSNSIMNSVT SSDISPMHSL LNSFSQDCGS RQITLPDSNP  540
LVSSTPILSK RVEVEPQFSP STIPCSLPQI EELELPQTRM SELCSLLPPL PGREFSIYHG  600
IGDSQNLLFG VNNQQNEPVN LRSSNDENDS FSNPFACSSS PSTAGTEFPP VSEMMSSSFV  660
DESGFLQRSE NDGQANPPSG TFVKVHKSGS LGRSLDISKF SSYPELRSEL AQMFGLEGQL  720
EDPLRSGWQL VFVDREDDVL LLGDDPWHEF VNNVWYIKIL SPQEVQQMGK EGCDLRHAIS  780
RPKHQNNFNS CDEYSIQQEL RHNRNGMASL TSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1221275115388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735329.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2H4Z9980.0A0A2H4Z998_AMATR; Auxin response factor
STRINGXP_010688801.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]