PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020241-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 713aa    MW: 79557.7 Da    PI: 7.6003
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020241-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.8e-2345145198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  AHYPO_020241-RA  45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKKLVAGDSVIFI--WN 134
                      99*****************************96555555..8************************************************..88 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      ++ +l+++++ 
  AHYPO_020241-RA 135 EKNQLLLGIRH 145
                      88889999986 PP
2Auxin_resp118.36.2e-39171254183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFvv+++k++ka++ ++v+vGmRf+m fete+ss rr++Gt++g+sdldpvrWp S Wrs+k
  AHYPO_020241-RA 171 AAHAASTNSRFTIFYNPRASPSEFVVPLAKYVKAVHhTRVTVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPTSYWRSVK 254
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-4831174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-4237160IPR015300DNA-binding pseudobarrel domain
CDDcd100179.67E-2244137No hitNo description
SMARTSM010191.0E-2345147IPR003340B3 DNA binding domain
PfamPF023622.1E-2145146IPR003340B3 DNA binding domain
PROSITE profilePS5086312.23845147IPR003340B3 DNA binding domain
PfamPF065075.3E-34171254IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLT MQEQKDVCLL PAELGTASKQ PTNYFCKTLT ASDTSTHGGF  60
SVPRRAAEKV FPPLDYTQQP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA  120
KKLVAGDSVI FIWNEKNQLL LGIRHANRSQ TVMPSSVLSS DSMHIGLLAA AAHAASTNSR  180
FTIFYNPRAS PSEFVVPLAK YVKAVHHTRV TVGMRFRMLF ETEESSVRRY MGTITGISDL  240
DPVRWPTSYW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR LKRPWPSGLP  300
SFPVLKDGDI GLNSPFMWLQ REAGDRCMSS LNFQGYGFNP WMQPRLDPTM LGLQPDIFQT  360
MASSAIQDPR GLEKRPNQSL LQFQPNQNVS YQQSSLIQNQ LLQQVQSQQT LAQSFQESQT  420
VAQNQIHGQL LQQQLQNCRQ YDGQQSQQQQ LTQFEQLRNQ FSDQQQIPKV INKTHSFGSS  480
TQSLPTSLET ISSVCQQQLF SNSIMNSVTS ADISPMQSLL NSFSQNGGSR QVTLPDSNPL  540
VSSSPILSKR VAVEPQLSPS TASCSLPQVE DLGGSQTRLS ELSSLLPPLP NREFSIYHGI  600
GDSQNNLLFG VNVQQNELTN LRSSNNETNS FSIPFACSNF PSTAGTEFPP ASEIMTTSCV  660
DESAFLQPTE NNGQANPPSG TFVKILLRKG NFLSGYKKER IHAISNYILI AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1261275115388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724627.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2H4Z9980.0A0A2H4Z998_AMATR; Auxin response factor
STRINGXP_010688801.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]