PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_020247-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 197aa MW: 22548.3 Da PI: 9.855

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_020247-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.9	1.1e-45	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Pt+eel+++yL++k +++ el++vi+++diy++eP++Lp ++++ ++w+fF+++++++a+g r+nr+t+sgyWkatg+ AHYPO_020247-RA 4 LPPGFRFYPTEEELITFYLHNKFYNQRSELDRVIPSIDIYNFEPSQLPGlageLCHGDMEQWFFFMQQQEREARGGRPNRTTSSGYWKATGSPS 97 79**************************999***********545654445778****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++++g+kktLvfykg+ap+g+kt+W m+ey++ AHYPO_020247-RA 98 YVYSSqTNKVIGVKKTLVFYKGKAPTGRKTKWKMNEYKA 136 9867778**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-47	3	146	IPR003441	NAC domain
PROSITE profile	PS51005	46.297	4	175	IPR003441	NAC domain
Pfam	PF02365	3.1E-24	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MEQLPPGFRF YPTEEELITF YLHNKFYNQR SELDRVIPSI DIYNFEPSQL PGLAGELCHG 60 DMEQWFFFMQ QQEREARGGR PNRTTSSGYW KATGSPSYVY SSQTNKVIGV KKTLVFYKGK 120 APTGRKTKWK MNEYKAVNQQ QQHNNNNNNN NASSSTTTAV PELMHGLSLY RVYITSGCAR 180 AFDRRPAGRI LGNIGAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	4	150	17	156	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	4	150	17	156	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	4	150	17	156	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	4	150	17	156	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	4	150	20	159	NAC domain-containing protein 19
3swm_B	2e-32	4	150	20	159	NAC domain-containing protein 19
3swm_C	2e-32	4	150	20	159	NAC domain-containing protein 19
3swm_D	2e-32	4	150	20	159	NAC domain-containing protein 19
3swp_A	2e-32	4	150	20	159	NAC domain-containing protein 19
3swp_B	2e-32	4	150	20	159	NAC domain-containing protein 19
3swp_C	2e-32	4	150	20	159	NAC domain-containing protein 19
3swp_D	2e-32	4	150	20	159	NAC domain-containing protein 19
4dul_A	2e-32	4	150	17	156	NAC domain-containing protein 19
4dul_B	2e-32	4	150	17	156	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021715697.1	1e-108	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	8e-73	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1S3XG35	7e-86	A0A1S3XG35_TOBAC; NAC domain-containing protein 90-like
STRING	XP_009597635.1	7e-87	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-64	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	AHYPO_020247-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]