PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020302-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 228aa    MW: 25708.9 Da    PI: 4.2535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020302-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.3e-151466148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ ++++G  +W++ ++         gRt++++k+ w+++l
  AHYPO_020302-RA 14 KGPWTPEEDQILINFIHLHGHSNWRALPKQAAiaarlPGRTDNEIKNVWHTHL 66
                     79********************8865444444444444************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-23574IPR009057Homeodomain-like
SuperFamilySSF466895.94E-16872IPR009057Homeodomain-like
PROSITE profilePS5129420.226970IPR017930Myb domain
SMARTSM007171.4E-111368IPR001005SANT/Myb domain
PfamPF002491.2E-131466IPR001005SANT/Myb domain
CDDcd001671.03E-131666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRAPCCDKV GLKKGPWTPE EDQILINFIH LHGHSNWRAL PKQAAIAARL PGRTDNEIKN  60
VWHTHLKKRL NQTQPKKPRK TRDNNVNNIT TTTTTTGSSN WSSPQQSYTT SEDFSSSGNE  120
VSSLDLSTDN TAAPTQSSDN SMDYNPIIDE SFWESSSFDF DYNSISDILD FDYESELQLQ  180
VKEETPETVD YCEYNNNGGL QYCGDENMDF WLDVFVQASG ESELPEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021721913.14e-66transcription factor MYB4-like
STRINGXP_010671030.18e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-39myb domain protein 15