PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_020351-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 253aa MW: 27444.7 Da PI: 6.7465

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_020351-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	2e-09	203	244	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR ri ++ +L+el+P+ +k s a++L +Av++Ik Lq AHYPO_020351-RA 203 QERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVDHIKGLQ 244 68****************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.449	193	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-7	198	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-7	203	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-10	203	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.49E-8	205	248	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-8	206	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MYSSSSSSSQ QQSSSNNQTN PNLIRYDSAP NTHLSNTVDS VVGLGHPHHQ FFSESTQSKL 60 SSTRGDSSNN NNNNNTLSLL HQGTYGMDTN TTSSGLIRHS SSPAGLLTHL ASDLGYTGSK 120 GFDVNYNGQG SSNMISRLGS QLSFTRKDHH SLSQISEVNE SIMFGNNESK RSSGFSLSAW 180 DDTNDNSFVI SSSSTTLNPL DPQERRTRIS GKLKKLQELV PNMDKQTSYA DMLDLAVDHI 240 KGLQNHIEPQ PS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010666766.1	7e-94	PREDICTED: transcription factor bHLH128
TrEMBL	A0A0J8B3U2	2e-92	A0A0J8B3U2_BETVU; Uncharacterized protein
STRING	XP_010666766.1	3e-93	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	4e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_020351-RA