PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020532-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 308aa    MW: 34709.4 Da    PI: 4.4403
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020532-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.17.8e-08153195345
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                       +k+ +r  +NR AA +sR+RKk +++ Le k+  +eae ++L
  AHYPO_020532-RA 153 LSKKRKRQLRNRDAAMKSRERKKIYVKDLEMKSRYMEAECRRL 195
                      57999*********************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-10148210No hitNo description
PROSITE profilePS502179.347153195IPR004827Basic-leucine zipper domain
PfamPF077162.1E-7154195IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-10155210No hitNo description
CDDcd147046.38E-14156207No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEVEGLNEYE WEHIFHDLEI PRNGFDDVFT EASSLPATEA IDSWIEELLM NDDGEQTSAP  60
NDCFTWSDLL VDSPNENFQV SDEHPPTEVK SSPNASESEG NLVDATRNPI DYDYKSNNNG  120
DGNTRNFKSN GENDKSGDDN LEGKDIDSDA DPLSKKRKRQ LRNRDAAMKS RERKKIYVKD  180
LEMKSRYMEA ECRRLGRLLQ CCYAENQMLR ISMSNAYGAS LTKPESAVLL LESLLLVSLV  240
WLMVNMCLLS QSKVQAPHES EETKKQKQEN AAQNRRGATV TDVSPQPQPL PQSRIDLADS  300
QGTQLRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155174KRKRQLRNRDAAMKSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684737.18e-74PREDICTED: bZIP transcription factor 60
TrEMBLA0A0K9QFM69e-64A0A0K9QFM6_SPIOL; Uncharacterized protein
STRINGXP_010684737.13e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-13basic region/leucine zipper motif 60