PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020533-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 1101aa    MW: 121963 Da    PI: 7.1264
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020533-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.98.1e-40180257178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv++C++dls+ k+yhrrhkvCe+hska+++lvs+++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+qa
  AHYPO_020533-RA 180 MCQVDNCREDLSKSKDYHRRHKVCEFHSKATKALVSKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNKRRRKTQA 257
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33174242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.65178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.42E-37179259IPR004333Transcription factor, SBP-box
PfamPF031102.6E-29181254IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.82E-8851990IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.6E-7891994IPR020683Ankyrin repeat-containing domain
CDDcd002049.05E-8896989No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MEEVGTQVAS PLFIHQNIGG RFCDVSLIGT KRSLCYSTTS NHQQQHQIHH PSHGWKLKDW  60
EWDSTRFVAR PRPVEPDVLC LGTLNQAPSN CNEAVNPILS TPLPSKSSNR LDDDKPAGSI  120
LRLQLGGCGI GDSDGAGTTI TKTNTGNAQN SNSKEDPVSS SRPNKKVRSG SPGSGGNYPM  180
CQVDNCREDL SKSKDYHRRH KVCEFHSKAT KALVSKQMQR FCQQCSRFHP LSEFDEGKRS  240
CRRRLAGHNK RRRKTQAEDT ASPAVQTTDN NKPGYGNLDI VNLLTVLARG QGNAELNVPT  300
CPSLPDKNQL IQILSKINSL PLPADIATNP LLSSFSARNG FEQGSLDPSN MDVNAASRST  360
TDLLAVLSST LPGSSPETLA FFSNMNNSAS SMDKNMSPIV DKDDAHKKPT VELQPLGGEK  420
SSSSYQSPTD DSDSQVQDTR LNLPLQLFSS SPGEDSSPNL ASSRKYFSSD SSNPTEERSH  480
SSTAPVTRKL FPLETTSESA RPVRMSFDEE AVVNIEQSQT ENSATRMTLE LFSMGKKTVS  540
NALLNLPPQA GYTSSSGSDH SPPSFNSDPQ KDRTGRIIFK LFDKDPSHFP GALRTQIYNW  600
LSNSPSEMES YIRPGCVVLS IYLSMKSAAW EQMEENFLQQ VEALLQSSDV EFWRSGRFSV  660
NIGRQLAIHK DGRIRICKPW STVTSPELFM VSPLAVVNGE NTTLVLRGMN LTSPGTKIHC  720
TYTGSYSSTE VLQFSDQGFT YDEIKLNEFK VYAAPSALGR CFIEVENGVR GNCFPVIIAD  780
VEICQELRLL EREFYEAKVS DVVTDVQTPY VASPHSHDEV LHFLNELGWL FQRQLCPEIA  840
VHDYMLHRFQ YLLTFSTERN YCALVKRLLD IFIESESRMD GLSTECMEAL ANMRLLHRAV  900
KGRSTKMVDL LIHYSAPCGS ITSKKYIFPP NHRGPGGITP LHLAACTSDS YEIVDVLTGD  960
PMQIGLHSWR FLLDDNGQSP YSYAVMRNDH ALNNIVGQKL ADKTNSQVSI NIGNEIVESA  1020
VPAEVRQRSS LQLNTKQNSC SKCVMMRYSR MPGSQGFLHR PFIHSMLTIA AVCVCVCLFF  1080
KSLHVNSVSF MWEHVDFGAM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-32170254184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021717801.10.0squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A0K9R1B90.0A0A0K9R1B9_SPIOL; Uncharacterized protein
STRINGVIT_18s0122g00380.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]