PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020593-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 735aa    MW: 81709.6 Da    PI: 6.2
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020593-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-08127148426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C ff++ G+C  GdrC+F+H 
  AHYPO_020593-RA 127 VPCIFFQK-GYCLKGDRCPFMHA 148
                      79******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033463IPR000571Zinc finger, CCCH-type
PfamPF156638.4E-113589No hitNo description
SMARTSM003560.00183562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.086591IPR000571Zinc finger, CCCH-type
SMARTSM003560.166790IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831123150IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-6124149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6125148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4126148IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5127148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MASTTTVTKE LLQPQHGGGG PSSSSSTMAE DESLKRNTDC VYFLASPLTC KKGSECEYRH  60
SEYARVNPRD CYYWLNSNCL NPKCSFRHPP LDGLIAPQAG NFAGPSVLVQ PGPPVPTVPQ  120
NPTKQGVPCI FFQKGYCLKG DRCPFMHAPN PPTMKIQQLP ASATVLEASV FNKTFSTLEK  180
CTQQKTNLQV NLPKVKEAPL QERAIPKVLP TRAVNGASAG RGYQPPIGMI QEVRKYGETK  240
PSSVGNGNLR TSTGTAHHSS SYDDRNIQNG READDSLRES SPGFDVLVDD KLNEDEYYLE  300
DQYVRMRGND GRNLKEFDMG RKDDYNSVAD MDPEIYHSRR GYDSFDRLPE KYTQEHRRAS  360
SERALGEPPQ YDRRGSYKSQ SPDFNQKSDL RNRLSKQRRV NGLKSVVNSD YSLDDHVEDR  420
GHRSIQRDSR QSAGHETSRG HRLQGRIKLP RRCSPMSGND VYSERGRLSP SRQQTSIQQG  480
HLRDRLSGRI QDESREGRRI NGPMARKDTP GADFAGPKRL SELKGSRQSD SDQQLIKSHQ  540
SGAGGKLRDR VLASSVGIED HTSFEGPKPL SEILKRKRTA TTGTTSENNK EEIKHNDNDV  600
NITDYASNSD TKTGTHVTLS SASEKDKAGE VDNKPLVVEA AEEEGEISNK KIKLNGDGHA  660
ESSLLESENK HSETKEDLVV ADNENQEYNE EYEAEDGAYD YEQYDGEGGT VDHEADSMDE  720
DDGDDFAKQL GVSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0946424e-81EU094642.1 Amaranthus hypochondriacus clone AHGA002 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680041.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A0K9QEN30.0A0A0K9QEN3_SPIOL; Uncharacterized protein
STRINGXP_010680041.10.0(Beta vulgaris)