PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020594-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 542aa    MW: 61123.5 Da    PI: 6.1931
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020594-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.9e-06185208226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      k  +C+ff++   C++G++C+ +Hg
  AHYPO_020594-RA 185 KVQICKFFLQ-QRCRFGANCRLSHG 208
                      7789******.*********98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.094183210IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5183209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5183208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4185208IPR000571Zinc finger, CCCH-type
SMARTSM004432.1E-13339385IPR000467G-patch domain
PROSITE profilePS5017412.903341387IPR000467G-patch domain
PfamPF015858.7E-12341383IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
SDYLLQYWHL APRFREAPTM ANEEEKLLET QLEFQLHEQK ESLTAIQDAL TSDPQNSELL  60
SIQQELVSSI RDAEEGLLYL KRARLLSEID SSVQSVSSHV DAKVEPIYLA EVEGSKLSHE  120
DIEAEPLDAT DEVETSEKPG FFVGSKCRFR HTDGHWYHGE VLELDGSSAR VSFLHPTSEN  180
MMTRKVQICK FFLQQRCRFG ANCRLSHGTL VRLSSLKKFV APCFGHPFIG SRIWAVSGNG  240
ASIWREAELG SWDDNLNQGV VVFRDNGNSE TLGVEAMSLS QYAETSDEEE GESDYSSSEN  300
SGSSDYEDDG LPQGLGFVES TALQKGIQTD TAIFADWENH TRGIASKMMA NMGYREGMGL  360
GLAGQGMVKP IPVKVLPPKQ SLDHALQSVK YDERDESSEK KKKRSRGGKR KREKKFAEAA  420
RAAKQEEEQR PDVFSLINNH LATHAKMINN ESSAKKHKSK ETKKEDRQSL VAYEEEVKEL  480
RVRVEKLEEM VNRNRKEKTV YEAAMRKLKE TRKALSEAEA KHASTSHAVV SKEKEKKWLR  540
F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021746324.10.0zinc finger CCCH domain-containing protein 18-like
RefseqXP_021852164.10.0zinc finger CCCH domain-containing protein 18
SwissprotQ6K6871e-179C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBLA0A0J8BDD30.0A0A0J8BDD3_BETVU; Uncharacterized protein
STRINGXP_010692950.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-132C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]