PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_020654-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 222aa MW: 24463.7 Da PI: 11.6469

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_020654-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	158	185	23	55
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L +l+P + +Kls + Le+A++YI Lq AHYPO_020654-RA 158 LGRLVPGC-----RKLSLSNLLEEATDYIAALQ 185 55666666.....8****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.204	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-7	145	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-6	152	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDSTISTYEE HTEEDTSREL SMRKKRRRID LTVNQNQSNN NQSQIRWRSQ AEQKSYSSKL 60 LNALRQVRRR NPTPAPVSGS RAVRDAADKA LAIAAKGRTR WSRAILANRL KLRLKNHKKA 120 KVRSRSPPQL PVTGNSRLFG ENNQQQKLTA LDKRVKVLGR LVPGCRKLSL SNLLEEATDY 180 IAALQMQVGT MAALTELLTG SNSGSSSGSS SGSMETNSSG S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	28	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269\|PubMed:20023194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010674630.1	3e-88	PREDICTED: transcription factor bHLH149
Swissprot	O80482	2e-34	BH149_ARATH; Transcription factor bHLH149
TrEMBL	A0A0K9RCQ0	2e-85	A0A0K9RCQ0_SPIOL; Uncharacterized protein
STRING	XP_010674630.1	1e-87	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	2e-16	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_020654-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]