PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_020751-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 112aa MW: 13083 Da PI: 10.1721

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_020751-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.7e-22	11	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF+ r+ ++kk+k+++ i+ + +C+k+g++++ +++ ++r+r+ +r +C+a++ ++ k+g+wev+k+++ H+H+++ AHYPO_020751-RA 11 QFYKAYAPMCGFTGRMGTNKKTKKTNDIYLKYIYCNKQGFNNDPTSA--INQRKRSLKRAECRAMVGLRACKEGHWEVYKFVESHTHHFS 98 6****************************************9988..88999*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-19	11	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MHFATLEGGV QFYKAYAPMC GFTGRMGTNK KTKKTNDIYL KYIYCNKQGF NNDPTSAINQ 60 RKRSLKRAEC RAMVGLRACK EGHWEVYKFV ESHTHHFSSP KIMYHLTNTR EH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678162.1	1e-28	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	K4Q0F0	1e-27	K4Q0F0_BETVU; Uncharacterized protein
STRING	XP_010678162.1	4e-28	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-11	FAR1 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_020751-RA