PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020770-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 489aa    MW: 53579.1 Da    PI: 5.5366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020770-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11274320354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++   Er+RR++ N++++ Lr+l+P++     +K + a+i+  A+++I++L
  AHYPO_020770-RA 274 PKNFVTERQRRQNFNDKYQLLRSLVPNQ-----TKGDRASIVWDAINHINEL 320
                      567889*********************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.001271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-9275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.13E-13276337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-10278333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-9280324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MYENQTEEDV CFDPNNIPEQ PAAPPISTVN GNGPSNHNNG FSSHDTDPQI HMNNHHYQQP  60
QESDSSVEFQ NPNNLINTNS WVNPTNLNHM TQNQDMGYTH FDENLQPTTD LLTLLHLPRC  120
SFASSSLPQT QSLSFGKPSS SPPPGSALGF LGELNPAMMV DNPSENGSST IFYDPTNVPG  180
LSYDPLFHLN LPPQPSPSLR DLMFVPHGYG NGRGNDGNGN GSGNGNGNSL FGGLDEGNTM  240
NGIGGIYQDN GDHLIHGNGV FEFSKGDGKG GKCPKNFVTE RQRRQNFNDK YQLLRSLVPN  300
QTKGDRASIV WDAINHINEL RRTVGELKLL VEKKRMSRER IKRHKTDQDT PSGGGDQPGN  360
GADTVVKPDP DEEFNGSTAI QLRSSWIQRK CKDTEVDVRI VDDDVTIKLV QRKKINCLLS  420
VSRTLDDLQL DLRHVAGGHV GDYYSYLFNS KICEGSSVYA SAIANKLIEI VEKQYAAASV  480
AVAPTTSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850497.10.0transcription factor bHLH91-like
TrEMBLA0A0K9R3E50.0A0A0K9R3E5_SPIOL; Uncharacterized protein
STRINGXP_010691929.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.13e-63bHLH family protein