PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020884-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 152aa    MW: 17928.3 Da    PI: 9.091
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020884-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.51.2e-093677245
             FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45
                     fYn+YAk+ GF vrk++s ++  +g++++r+f+C + gk+  + 
  AHYPO_020884-RA 36 FYNNYAKRHGFVVRKDRSDTK--QGRTVRRDFYCHRAGKKPMKA 77
                     9***************99988..8889************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-73678IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MLDFDLNDPL IEDEKMSDDE SFIGQTFETQ EEAFIFYNNY AKRHGFVVRK DRSDTKQGRT  60
VRRDFYCHRA GKKPMKAHMR ITLKRNYDIF PEEWHVTKFS KEHNHEMLPL EAMRFLPINR  120
NIDPKDEKQI IAKGSWSKGS PNNSSLGAAK KC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021756202.14e-61subtilisin-like protease SBT5.4
RefseqXP_021757665.14e-63protein FAR1-RELATED SEQUENCE 11-like isoform X1
RefseqXP_021757666.11e-63protein FAR1-RELATED SEQUENCE 11-like isoform X2
RefseqXP_021757667.11e-63protein FAR1-RELATED SEQUENCE 11-like isoform X2
TrEMBLA0A2U1M8441e-43A0A2U1M844_ARTAN; Protein FAR1-RELATED SEQUENCE 11
STRINGXP_010689388.18e-37(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-21FAR1-related sequence 11