PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020914-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 114aa    MW: 12682.3 Da    PI: 9.2929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020914-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C++ F ++  L  H++ H
  AHYPO_020914-RA 55 FSCTYCKRKFYSSQALGGHQNAH 77
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-65382No hitNo description
PROSITE profilePS5015711.0325582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MDFELKSSSS DLHPQMINLD LELDLMLDRS SSSSVSSPAS FSRPSSSAVG EARVFSCTYC  60
KRKFYSSQAL GGHQNAHKLE RTLAKRNKEL SRHGTIIMSH NSSLSDHMGM FRAQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831246.12e-26PREDICTED: zinc finger protein 2
SwissprotQ392614e-19ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A0E0LXV56e-22A0A0E0LXV5_ORYPU; Uncharacterized protein
TrEMBLA0A0K9RFM01e-21A0A0K9RFM0_SPIOL; Uncharacterized protein (Fragment)
STRINGMigut.J01452.1.p8e-26(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-21zinc finger protein 2