PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021134-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 62aa    MW: 6958.32 Da    PI: 9.7531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021134-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.94.7e-091230220
                     --SS-EEEEEEE--TT-SS CS
             WRKY  2 dDgynWrKYGqKevkgsef 20
                      D++nWrKYG+K++kgs++
  AHYPO_021134-RA 12 TDKWNWRKYGKKVIKGSKM 30
                     7****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-7330IPR003657WRKY domain
PROSITE profilePS508118.696628IPR003657WRKY domain
SuperFamilySSF1182901.26E-6730IPR003657WRKY domain
PfamPF031069.7E-51329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MVQQAYGDRI LTDKWNWRKY GKKVIKGSKM LMLGLLLWFW SLLTVLDASD PLAAVLEAAT  60
C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-