PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021303-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 336aa    MW: 37795.1 Da    PI: 7.9052
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021303-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.5e-107196127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +kt+lC  f+  G+Ck G++C+FaHg+
  AHYPO_021303-RA 71 FKTRLCAKFRM-GQCKNGENCNFAHGE 96
                     69*********.*************96 PP
2zf-CCCH291.8e-09134157225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k++lC+ f+ + +C+yG+rC+F+H
  AHYPO_021303-RA 134 KMKLCKKFYNGEECPYGERCNFSH 157
                      889*******66************ PP
3zf-CCCH40.64.2e-13225251127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC  f  tG+C++Gd+C++aHg+
  AHYPO_021303-RA 225 WKTKLCIKFENTGYCPFGDNCHYAHGQ 251
                      8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-1569103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-869101IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-67096IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7047097IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-77196IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-4132159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-7132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436132160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-9134159IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-7134157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-16221256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-10222254IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-8224251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.91224252IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-11225251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSSSDSFPFP PNGLDSMDFW PQLPISNEES EYDQPPMKRH KNASDNQPTN NIHRTPQNIP  60
PVNQPNGKIF FKTRLCAKFR MGQCKNGENC NFAHGEEDLR KPPPNWQELV GGRTDDRRSG  120
GSENWDDDER IILKMKLCKK FYNGEECPYG ERCNFSHKEP PKFRENPTRF RDSSRESVAI  180
SIGTTGSSLG QSRTADQYDV QRMAAPTNVN GSMDGMRGNS RPVWWKTKLC IKFENTGYCP  240
FGDNCHYAHG QAELLPPSSR STEAELAVTH SVSLKPGSAT NNDPTPLKSD VRFGSSQDGQ  300
AKKCLVKWKA TKKINRIYGD WIDDLPLTLP TEVET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021741660.11e-162zinc finger CCCH domain-containing protein 39-like isoform X2
SwissprotQ9LT812e-79C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0K9R3T91e-155A0A0K9R3T9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676669.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-81C3H family protein