PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021317-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 232aa    MW: 25437.8 Da    PI: 6.0997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021317-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00025072123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk Fs+   L  H  +H
  AHYPO_021317-RA 50 FSCKTCGKKFSSFQALGGHRASH 72
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.16E-848115No hitNo description
Gene3DG3DSA:3.30.160.605.9E-44877IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1755077IPR007087Zinc finger, C2H2
PfamPF139122.6E-105074IPR007087Zinc finger, C2H2
SMARTSM003550.0965072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139121.0E-892117IPR007087Zinc finger, C2H2
PROSITE profilePS501578.62193117IPR007087Zinc finger, C2H2
SMARTSM003551.293115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTTIERFSAI PGAAGELETF VMENCRLMLL SSRQNGSNSA IVEDDIGRIF SCKTCGKKFS  60
SFQALGGHRA SHKKIKPAEN SGESNLPAKP KVHTCLICGV EFPIGQALGG HMRRHRGILA  120
AVKVAVGGDD ESATVSNVTT EGSIEISHGS HNDADKIKRK WNDDVLETPI LKKPSCFKRV  180
CLDLNLSLSM CEKNEEKEED DVDEYETVEQ GVKEEHDFLK LELGLPSYRF N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685828.14e-62PREDICTED: zinc finger protein ZAT12
TrEMBLA0A0K9QZC06e-45A0A0K9QZC0_SPIOL; Uncharacterized protein
STRINGXP_010685828.11e-61(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.15e-27C2H2 family protein