PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021337-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 329aa    MW: 36087.6 Da    PI: 4.7178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021337-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1885135155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr++  +g+WvAeIr p   + r kr +lg+f ta eAa a+++a++ ++g
  AHYPO_021337-RA  85 CKFRGVRQRT-WGKWVAEIRAP---N-RgKRLWLGTFPTAVEAALAYDEAARVMYG 135
                      79*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.89E-3385145No hitNo description
PfamPF008471.1E-1285135IPR001471AP2/ERF domain
SMARTSM003804.9E-3986149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3186144IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2186144IPR016177DNA-binding domain
PROSITE profilePS5103221.7286143IPR001471AP2/ERF domain
PRINTSPR003673.0E-98798IPR001471AP2/ERF domain
PRINTSPR003673.0E-9109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDTFDNKGTF NPPSSSSSVS FDYTRKRKTR RRRDESVEET LAKWKEINSK LNAENEGRKP  60
IRKAPAKGSK KGCMRGKGGP ENSLCKFRGV RQRTWGKWVA EIRAPNRGKR LWLGTFPTAV  120
EAALAYDEAA RVMYGSSARL NFPNQPSSSV SLEDYRDNSA TTTPTTTATS YTTASATSSD  180
THTLDQSVGR IEGISMVSKG EPSSNPLEEE AQPDEGGIDI NEYLQNLTVD EMFDADELLG  240
AIDAGPVSPV GNSMNPGYDS FKSEVENNSI PLDKPEDWSF LNFNSDFLQQ LSNQDDSSLF  300
GSLQLHQGDQ DDKGVGYGSN LFKTEDSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1787143360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328TRKRKT
22633RKTRRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021769253.11e-102dehydration-responsive element-binding protein 2C-like isoform X1
RefseqXP_021769254.11e-102dehydration-responsive element-binding protein 2C-like isoform X2
TrEMBLA0A0K1LXK23e-97A0A0K1LXK2_9CARY; Dehydration responsive element binding transcription factor 2A
STRINGXP_010692919.11e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.17e-39ERF family protein