PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021444-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 212aa    MW: 24481.8 Da    PI: 5.0157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021444-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-1989138255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+W+AeIrdp     +   r++lg+f taeeAa+ +++a+ +++g
  AHYPO_021444-RA  89 RFRGVRQRP-WGKWAAEIRDP-----HraVRVWLGTFETAEEAAREYDRAAVRFRG 138
                      69*******.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-3489152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3089147IPR001471AP2/ERF domain
CDDcd000181.51E-3189145No hitNo description
PROSITE profilePS5103223.93389146IPR001471AP2/ERF domain
PfamPF008473.0E-1289138IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2189147IPR016177DNA-binding domain
PRINTSPR003674.3E-1190101IPR001471AP2/ERF domain
PRINTSPR003674.3E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
METVTNYFYS NERPDSWPLS PEQEMNIMVE ALKHVISGCS EPPDSGSQLV NQAISTWSTS  60
NSGTVPPNED SNTQTNNGRK RKRKYNRNRF RGVRQRPWGK WAAEIRDPHR AVRVWLGTFE  120
TAEEAAREYD RAAVRFRGPR AKLNFSLSDY LPQLEQQQQD EHHKIEQQQS VDEQEGERFV  180
QITDREELDV WVNGMIDDSP PSFTLSGDPQ W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2290147361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2190147664ATERF1
3gcc_A1e-2190147664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853978.14e-78ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0K9RU152e-75A0A0K9RU15_SPIOL; Uncharacterized protein
STRINGXP_010666622.14e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-21related to AP2 6