PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021565-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 280aa    MW: 31850 Da    PI: 8.584
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021565-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40144220278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl++rfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++
  AHYPO_021565-RA 144 CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVITAGLTRRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSNN 220
                      **************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-34139205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.163141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-38142222IPR004333Transcription factor, SBP-box
PfamPF031102.1E-30144217IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSSYEWNNHS SSSHNIFLSD IDLHNHNNNH NHNNFQIHHQ HHESLSSSSI PHHPIYDNPF  60
TNSCTFPHDN TTTQPQIPLY SYPNTLETFS SVMQIPKTEP DLFTNRPIGL NLGRRTYFSA  120
DDDLVSRLYC RSRGVDPAVQ SPKCQAEGCN ADLSHAKHYH RRHKVCEFHS KASTVITAGL  180
TRRFCQQCSR FHLLSEFDNG KRSCRKRLAD HNRRRRKSNN QRVTSSAASM SSENTDSSPS  240
QNIIRSPSDS AMNSSLSVTI AMSPPRISFD SNFMQQSYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-301442171184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748419.11e-124squamosa promoter-binding-like protein 8
SwissprotQ8GXL34e-66SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A0K9R9E31e-118A0A0K9R9E3_SPIOL; Uncharacterized protein
STRINGXP_010692128.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-68squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]