PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021574-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 510aa    MW: 55241.9 Da    PI: 7.4353
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021574-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.3e-16169218155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++ rW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  AHYPO_021574-RA 169 SQYRGVTFYRRTSRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 218
                      78*******************......55************************997 PP
2AP238.23.6e-12261311155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+ +lg f+++ eAa+a+++a+ +++g
  AHYPO_021574-RA 261 SRYRGVTLHK-CGRWEARMGQF--L-GKKYMYLGLFDSEVEAARAYDKAAIQFNG 311
                      79********.7******5553..2.26**********99**********98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-8169218IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-15169227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-16170226IPR001471AP2/ERF domain
SMARTSM003804.6E-30170232IPR001471AP2/ERF domain
PROSITE profilePS5103217.201170226IPR001471AP2/ERF domain
CDDcd000181.43E-24261321No hitNo description
SuperFamilySSF541712.29E-16261320IPR016177DNA-binding domain
PfamPF008479.0E-8261311IPR001471AP2/ERF domain
PROSITE profilePS5103216.331262319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15262319IPR001471AP2/ERF domain
SMARTSM003801.3E-31262325IPR001471AP2/ERF domain
PRINTSPR003673.5E-6263274IPR001471AP2/ERF domain
PRINTSPR003673.5E-6301321IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MFDLNIGVAN NLSPENNIKE REKDSMIVEE GSATNTELSG TSSASSLVNA ADESPISCTG  60
EFDFFSKSQN DDVSRIVTRQ LFPMNEDIDD NIHINGGDGN KEMELIRIGS SSSTTTRVSS  120
SSTSNQWLNL AVLGSSSGSG PGPGLGTDHQ INVKQQVKRS RRGPRSRSSQ YRGVTFYRRT  180
SRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFSIADY EEDMKQMKNL  240
SKEEFVHILR RQSNGFSRGT SRYRGVTLHK CGRWEARMGQ FLGKKYMYLG LFDSEVEAAR  300
AYDKAAIQFN GRDAVTNFEP SSYEGQIPIM HPNNEGDGQN LDLNLGISIT IDGPRGNFDK  360
GVGESQTHPH PPLHHANGKW PLNGGSAYFS PGAPPLHGHP LASRQSTSTF SGLLPGRCAI  420
YEDRVGDEKL QKALAPSASL PNWACYMPNQ GQVHGGSGGG VGGTATQVQP LSTAASSGFS  480
SFSTATASSA SYPFTNLPNN NFHNKCRGT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744267.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
RefseqXP_021744268.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X3
TrEMBLA0A0K9QBF80.0A0A0K9QBF8_SPIOL; Uncharacterized protein
STRINGXP_010693088.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.37e-92related to AP2.7