PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021712-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

YABBY

Protein Properties

Length: 192aa MW: 21434.1 Da PI: 8.0743

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021712-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	235.3	1.4e-72	3	164	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 fs+se+vCyv+C+fCntilavsvP s++++vtvrCGhC++llsvn+ + ++ +++++ l ++ ++++n+++ ++ ++as+s + AHYPO_021712-RA 3 FSTSERVCYVHCTFCNTILAVSVPCCSMYNLVTVRCGHCANLLSVNIGLSPPPVPLQDNFHL-----LRQQYYNNQDNMSKDSISLSAASSSST 91 689*********************************************999999998443.....444444555555555555566666666 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++l++++ e+++ pp irPPekrqrvPsayn+fikeeiqrikasnP+ishreafsaaaknWahfP+ihfgl AHYPO_021712-RA 92 ITTLTSDQLENLQPRPPPIRPPEKRQRVPSAYNKFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFGL 164 666777777776655666***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-70	5	164	IPR006780	YABBY protein
SuperFamily	SSF47095	8.64E-8	109	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MDFSTSERVC YVHCTFCNTI LAVSVPCCSM YNLVTVRCGH CANLLSVNIG LSPPPVPLQD 60 NFHLLRQQYY NNQDNMSKDS ISLSAASSSS TITTLTSDQL ENLQPRPPPI RPPEKRQRVP 120 SAYNKFIKEE IQRIKASNPE ISHREAFSAA AKNWAHFPHI HFGLNLDGQR QARLDQSVDG 180 EGTNNKSHGF Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685466.1	1e-115	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	6e-73	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A061GUT1	2e-80	A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1
TrEMBL	A0A0K9Q773	2e-80	A0A0K9Q773_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685466.1	1e-114	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-63	YABBY family protein

Link Out ? help Back to Top
Phytozome	AHYPO_021712-RA

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]