PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021867-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 150aa    MW: 16534.7 Da    PI: 7.4798
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021867-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.12.2e-314100196
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPv +  + +  +q+q+ +++  
  AHYPO_021867-RA   4 PCGACKFLRRKCTSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRHDAVLTISYEAQARLSDPVASIQAELAMVQNQVISSRMA 97 
                      7***********************9989***********************************************************9888776 PP

           DUF260  94 lal 96 
                      +a 
  AHYPO_021867-RA  98 IAN 100
                      654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.243105IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-30498IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
AIAPCGACKF LRRKCTSGCI FAPHFGSDQG AARFAAVHKV FGASNVSKLL LHIPMNRRHD  60
AVLTISYEAQ ARLSDPVASI QAELAMVQNQ VISSRMAIAN ALQNSQQQQQ ISNHGYDVVM  120
HHPQHHHPHH DDDDDDITPT HIAFANHLLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-30191897LOB family transfactor Ramosa2.1
5ly0_B7e-30191897LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021755963.11e-64LOB domain-containing protein 20-like
SwissprotQ9SRV35e-54LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2C9VIZ18e-60A0A2C9VIZ1_MANES; Uncharacterized protein
STRINGcassava4.1_028764m1e-60(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-54LOB domain-containing protein 20