PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021904-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 232aa    MW: 25866.6 Da    PI: 4.8594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021904-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192574255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  AHYPO_021904-RA 25 KYLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 74
                     799******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-302582No hitNo description
PfamPF008471.8E-122574IPR001471AP2/ERF domain
SMARTSM003802.0E-342589IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-192583IPR016177DNA-binding domain
PROSITE profilePS5103220.9692583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-282583IPR001471AP2/ERF domain
PRINTSPR003678.1E-92637IPR001471AP2/ERF domain
PRINTSPR003678.1E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTKISSPRSK RKHHQQQEDS PSNIKYLGVR RRPWGRYAAE IRDPTTKERH WLGTFDTAEE  60
AALAYDRAAR SMRGSSRART NFVYSDSPPG SSVTSILSPD DQSLLNQIFF TNGSSSTQTQ  120
PNIVDQNFWA CWTDNYPQPN TNYQPIENKE DTQEVELPPL PPDITSSYNM GLDVGMGMGM  180
GMGMGMSQWV GNNPEFFGFS GQIESFGINN IIYSDPNVIS NPVSNGFDFS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-192682359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673983.11e-105PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9FZ908e-42ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A0K9S1V41e-92A0A0K9S1V4_SPIOL; Uncharacterized protein
STRINGXP_010673983.11e-104(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]