PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021965-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 400aa    MW: 45467.9 Da    PI: 4.8251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021965-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12181225655
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++Er+RR+++N+++  Lr+++P+ +      Kl+ a+iL  A++Y+++Lq
  AHYPO_021965-RA 181 LMAERKRRKKLNERLYLLRSIVPNiS------KLDRASILGDAIKYVQELQ 225
                      589*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.751175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-12177229No hitNo description
SuperFamilySSF474594.32E-16178237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9181225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-15182236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAELFAAKQM NEDQNVIDYV ITQCTTLMEQ AAISSSSNGA HTFSMNMINE LQSNPTLSDQ  60
NNANHTISDQ IININNNESQ SSMNFMFNYV SETNKIARND FLQGGNENGF EELMNNANSM  120
HNMHHVMDHS INEQQIDEKG SIPKHEMGRA DSVSDSDPLD DEEDSKYHRR RPTKGPQSKN  180
LMAERKRRKK LNERLYLLRS IVPNISKLDR ASILGDAIKY VQELQKEEKD LQNELARNSD  240
DEDHNNDTNI DYGQHNLHQL HQPNFLQEVS NPHGSRFDHQ TGGAGAPENF RAGSQDFDNT  300
SDKAQQMEVQ VEVAQLEGND FFVKVFGEQK RGGFVRLMEA LSYLGLEIIN VNMTKAEYLR  360
DSLLEATRSQ VGFWSEMAKA STENSSGIEQ SRQQNSQHYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168189RRRPTKGPQSKNLMAERKRRKK
2183190ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021773804.10.0transcription factor ABORTED MICROSPORES-like isoform X2
TrEMBLA0A0K9Q6S81e-116A0A0K9Q6S8_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010690347.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-32bHLH family protein