PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021999-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 181aa    MW: 20975.8 Da    PI: 4.5948
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021999-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.2e-111463787
                     EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                     +l+d +g+ W++ l  +    + ++t GW eFv+a++L  gD +vF ++++
  AHYPO_021999-RA  1 MLTDIHGNIWDIML--DS---TNFFTCGWTEFVEAKNLTPGDAFVFIRKKS 46
                     689***********..44...4589*********************96643 PP
2Auxin_resp28.56.4e-1175144167
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafete..dsser.rlsGtvvgvs 67 
                      a+++a++++ Fe+vY+P  + +eFvv+  kv +a ++++   m +k+  e     ++ + r +Gtv  + 
  AHYPO_021999-RA  75 AIEKARNMESFEIVYYPLLGFPEFVVPKVKVDNAQRISWRCEMLVKFWHEFGvyGVPIKcRHTGTVLNIV 144
                      5788999********************************9999888766543113433313377776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.661162IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-10247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-8247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-7260No hitNo description
PfamPF023624.9E-8257IPR003340B3 DNA binding domain
PfamPF065071.7E-776153IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MLTDIHGNIW DIMLDSTNFF TCGWTEFVEA KNLTPGDAFV FIRKKSSNDG NDEYYIGIRK  60
GVVNTGIRVE DIEDAIEKAR NMESFEIVYY PLLGFPEFVV PKVKVDNAQR ISWRCEMLVK  120
FWHEFGVYGV PIKCRHTGTV LNIVHRENDV EWHENPELLE DMPNLQNMSP WELQVYPSAQ  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-16auxin response factor 17