PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022000-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 378aa    MW: 43678.3 Da    PI: 5.0208
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022000-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68.1e-121752432797
                      ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE CS
               B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvf 97 
                       ++k+es+ ++l+d +g +W + l     s + ++t GW++F++a++L  gD++vF ++  ++  + e++++++
  AHYPO_022000-RA 175 RIPKNESQNIMLTDIHGYVWHIVL----ES-GNFFTYGWNKFANAKNLTPGDSLVFIRKrsSNdVNDEYYIGIR 243
                      566789999***************....33.357999*******************955113334445555555 PP
2Auxin_resp33.51.9e-12259346183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfk....mafetedsserrlsGtvvgv..sdldpvrWpnSkWrsLk 83 
                      a+++a++++ FevvY+P  + +e+vv+  kv  a  +++   m ++    +++e+e  + r+  G    +  ++ d ++Wp+S Wr+L+
  AHYPO_022000-RA 259 AIEKARNMESFEVVYYPIRGLPEYVVSKVKVDYARCIRWRRQMPVRyvheLRVEGEPKKWRQ-IGRLLNIvhRENDMSSWPDSWWRVLQ 346
                      5788999***************************9999999998873344677777776666.5554444113457778********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.419147246IPR003340B3 DNA binding domain
SMARTSM010190.003152246IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-11158231IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-9174244IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-12175231IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-8176244No hitNo description
PfamPF065073.9E-9260346IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAASSSSSLD YEEIYTPSVL SSSASSPWPL PYEPEIDQEI WEAFAGNLVD IPKKDSLVYY  60
FPQGHIEHVQ DNPNPNPNPS PSPNPNPNPN PIRCGSFLCR VMNVSFLADP QTDQVFVKFL  120
LQPCIIDNPN PNPDPNPDPN PIRDNVVSYV NILSNIITKY FYYVGTPLRE NIFTRIPKNE  180
SQNIMLTDIH GYVWHIVLES GNFFTYGWNK FANAKNLTPG DSLVFIRKRS SNDVNDEYYI  240
GIRRGVVNTG ISVEDIEDAI EKARNMESFE VVYYPIRGLP EYVVSKVKVD YARCIRWRRQ  300
MPVRYVHELR VEGEPKKWRQ IGRLLNIVHR ENDMSSWPDS WWRVLQIKWH SDPELLEDMP  360
NLQKNMSPWE LQVYPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A4e-293637219353Auxin response factor 1
4ldx_B4e-293637219353Auxin response factor 1
4ldy_A3e-293637219353Auxin response factor 1
4ldy_B3e-293637219353Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-32auxin response factor 17