PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022203-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 648aa    MW: 71770.4 Da    PI: 8.2853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022203-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07548597147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  AHYPO_022203-RA 548 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 597
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.801543602IPR017930Myb domain
SMARTSM007171.5E-7547600IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-11548598IPR009057Homeodomain-like
SuperFamilySSF466894.34E-16549630IPR009057Homeodomain-like
CDDcd116603.06E-17549599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MLQKRLDYGF SGYLLPFVPK AARSSRRRGV CQSKAADKQL CAFDLLATVA GKLLECESTQ  60
LADVQDVVMQ EKAEADASVK TDCCDKESTE AASLNLELGL PVQDHVCNVK EIVDVHNYAS  120
SPPDSAITLC HCLEKDESFV KMDIVDDKID FCSRSQNPGL CEPGHIALCD PNLNDAMEQD  180
DGKREIAFEN GADFSFGKAP AAASSDCSIK LSLGADQYGS GSLFPSRGNN VKVVFRDDDE  240
NSSECIQPSI TKSTRIPARI GNRKIRRLLG SKYWKVASKV KDGDYSETGR LLHLELRCIY  300
RSRKTGYKRQ RSQRIYPFKK RKIFRYNSLS NSDGDTDCKG VYDSPGRAID PTVSSLCVAG  360
QSTSFASRES HVKLRIKSFR VPELFIEMPE TATIGSLKRT VMDAVTTLLG GGLRVGVLLQ  420
GKKIRDDNKT LVQSGICCHD EKVKSLGFTL EPNPSHSEVS TDEPQPISSF PASYNHQGAS  480
HDHLMCNIRN LVESDHDSAP SPAETTAEKG AVDFRALVPI PDGTPQALAI LPAHQKSKRS  540
EMAQRRIRRP FSVSEVEALV QAVEKLGTGR WRDVKLRAFD NVKHRTYVDL KDKWKTLVHT  600
ARISPQQRRG EPVPQELLDR VLSAHSYWSQ QQAKQQLKQP SEPCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-585326471112Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312321QRIYPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720832.10.0telomere repeat-binding protein 2-like
RefseqXP_021720833.10.0telomere repeat-binding protein 2-like
SwissprotQ6R0E31e-124TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0K9S2D70.0A0A0K9S2D7_SPIOL; Uncharacterized protein
STRINGXP_010685737.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-122TRF-like 2