PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022218-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 210aa    MW: 23096.2 Da    PI: 9.739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022218-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.8e-212070155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr ++ +gr++AeIrdp   g+++r++lg+f+tae+Aa+a+++a+++++g
  AHYPO_022218-RA 20 PRYRGVRKRP-WGRYAAEIRDP---GRKARVWLGTFDTAEDAARAYDKAALQYRG 70
                     68********.**********8...556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-322080No hitNo description
PfamPF008479.4E-152070IPR001471AP2/ERF domain
SMARTSM003804.7E-342184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-312179IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-222179IPR016177DNA-binding domain
PROSITE profilePS5103224.2632178IPR001471AP2/ERF domain
PRINTSPR003672.6E-112233IPR001471AP2/ERF domain
PRINTSPR003672.6E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSLFKEKQKS TTNNNCIEKP RYRGVRKRPW GRYAAEIRDP GRKARVWLGT FDTAEDAARA  60
YDKAALQYRG SRATLNFTDT LLEYPAVNSA VTADNRSVSP NESSLSSAVT TVEWSSHAVP  120
IPRDLTSHLM GVGSRYPLFY QSYIPPSGLI GLVRPPLPVC LKPRNVGPMI PGLERVGLGG  180
TISDSESSSS VVEDSHTKWE LNLELRLGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-232277662ATERF1
3gcc_A4e-232277662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666079.11e-34PREDICTED: ethylene-responsive transcription factor 4
TrEMBLA0A0J8DZT52e-33A0A0J8DZT5_BETVU; Uncharacterized protein
STRINGXP_010666079.14e-34(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.17e-22ethylene responsive element binding factor 4