PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022227-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 381aa    MW: 42388.9 Da    PI: 5.8006
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022227-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.56.5e-34194252159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+s+fprsYYrCt+a C vkk+vers++dp++v++tYeg+H+h+
  AHYPO_022227-RA 194 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSSDDPTIVVTTYEGQHTHP 252
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-34179254IPR003657WRKY domain
SuperFamilySSF1182902.09E-29186254IPR003657WRKY domain
PROSITE profilePS5081132.202189254IPR003657WRKY domain
SMARTSM007747.4E-40194253IPR003657WRKY domain
PfamPF031062.6E-27195252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MENHNHNHNN LIINPINNNL PSTNFSDHMI FDVDHDDDHL IMMGDGLEKN KINNNYYLGF  60
MEMLGFQDSS LFDLFSEPTV STAPMMHPTS LDPSPSCSTH PAESSDVVTT PATPNSLSIS  120
SSSSDAVNEE HLPFLNHQND NNTVQINEDN DVDDNEKNNQ DKSKNQSLKP KKKNQKKQKE  180
PRFAFMTKSE VDHLDDGYRW RKYGQKAVKN SPFPRSYYRC TTAACGVKKR VERSSDDPTI  240
VVTTYEGQHT HPCPVMARGG IASLRVDMGM GVGVIPSPNP MYQCNTDFTE IGAASSLLSP  300
NSQIYFHNNF FPLNNQFPNH FLNPSPTFSS LGGGGGPQSK FNTNIPCPPH SSSLNQVKDD  360
GLLQDLVPSQ MRNDQLPKEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-291872541077Probable WRKY transcription factor 4
2lex_A7e-291872541077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021774274.11e-86probable WRKY transcription factor 23
TrEMBLA0A0K9QEI83e-75A0A0K9QEI8_SPIOL; Uncharacterized protein
STRINGXP_010671761.15e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.16e-47WRKY DNA-binding protein 48