PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022289-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 379aa MW: 40180.1 Da PI: 8.9768

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022289-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.2e-39	89	147	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWtkGG+lrnvP+Ggg+rknk+ AHYPO_022289-RA 89 QQNLRCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGTLRNVPIGGGCRKNKTL 147 7899****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	88	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-33	90	146	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.441	92	146	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	94	130	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MIQELLGGSN TPTGFLGERK ISIPFSSPSS TCPSSTPILT TTTNTITIPT SISTTSLANS 60 SNSQSPGSVN NTNTTNNNNS NNSEANPSQQ NLRCPRCDST NTKFCYYNNY NLTQPRHFCK 120 TCRRYWTKGG TLRNVPIGGG CRKNKTLSGN ASSVASGLVK SASNSMAKAK ASLSSELLIN 180 GNPAGYLGTG LLDHFQHHSE LQSGYPNPIF FPSLPQNSHI LSVLRGSTQF HNPNPNPNPI 240 SSNIFSSIKS ESGNTNTTLG LDSFGNNGAP SNLLGSFPRS NQHINGFSSG VPDYVQNNGN 300 ILEAYQRLKT STNYNNYSGN ENMVGSVPSS PNHSSILDAA PVISGSTDHF GSYGLMNSSA 360 LLSGWSDYPT IPINGSYP*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MIQELLGGSN TPTGFLGERK ISIPFSSPSS TCPSSTPILT TTTNTITIPT SISTTSLANS  60
SNSQSPGSVN NTNTTNNNNS NNSEANPSQQ NLRCPRCDST NTKFCYYNNY NLTQPRHFCK  120
TCRRYWTKGG TLRNVPIGGG CRKNKTLSGN ASSVASGLVK SASNSMAKAK ASLSSELLIN  180
GNPAGYLGTG LLDHFQHHSE LQSGYPNPIF FPSLPQNSHI LSVLRGSTQF HNPNPNPNPI  240
SSNIFSSIKS ESGNTNTTLG LDSFGNNGAP SNLLGSFPRS NQHINGFSSG VPDYVQNNGN  300
ILEAYQRLKT STNYNNYSGN ENMVGSVPSS PNHSSILDAA PVISGSTDHF GSYGLMNSSA  360
LLSGWSDYPT IPINGSYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021752141.1	1e-147	dof zinc finger protein DOF2.1-like
TrEMBL	A0A0K9R6D7	2e-94	A0A0K9R6D7_SPIOL; Uncharacterized protein
STRING	XP_010680457.1	1e-143	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	AHYPO_022289-RA