PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022311-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 287aa    MW: 31646.8 Da    PI: 4.6744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022311-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-193987355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  AHYPO_022311-RA 39 YLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 87
                     88******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.0483896IPR001471AP2/ERF domain
CDDcd000182.39E-293895No hitNo description
SMARTSM003803.3E-3438102IPR001471AP2/ERF domain
PRINTSPR003671.1E-83950IPR001471AP2/ERF domain
PfamPF008473.5E-123987IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-193996IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-283996IPR001471AP2/ERF domain
PRINTSPR003671.1E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDLGLNTSSK ATKTPSPRSK RKQQQQQQQQ EDSPPSIRYL GVRRRPWGRY AAEIRDPTTK  60
ERHWLGTFDT AEEAALAYDR AARSMRGPSK ARTNFVYSDS PPGSSVTSFL SPDDQSHLNQ  120
IFFANGPSLA QTQPNPIDQN VWACWGDNYP QPNSNYQPIE NMGTTKEVEL PPLPPDITSS  180
YNMGMGMDMG MGMGMDMDTS MGLDMSQWVE NNPDFFGFSG QNGSSVGFDS IISNETNLIG  240
TSSGANPNDN SQYHSAMQHS PLFSKMPVVS DPVFDGFNQG SSSYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-183995359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673983.11e-138PREDICTED: ethylene-responsive transcription factor LEP
TrEMBLA0A0K9S1V41e-121A0A0K9S1V4_SPIOL; Uncharacterized protein
STRINGXP_010673983.11e-137(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.17e-33ERF family protein