PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022475-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 239aa MW: 26743 Da PI: 4.4321

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022475-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.5e-37	28	85	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 a +cprC s+ntkfCyynnyslsqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+++s+ AHYPO_022475-RA 28 APPCPRCASSNTKFCYYNNYSLSQPRFFCKGCRRYWTKGGSLRNVPVGGGCRKSRRSR 85 568***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-23	12	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-32	29	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.444	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSNNELFQTL PPHSLMPDRR WRANIDPAPP CPRCASSNTK FCYYNNYSLS QPRFFCKGCR 60 RYWTKGGSLR NVPVGGGCRK SRRSRSSKAG SGPNSSTQSD TNLQSPNSSS NYSESGCPDI 120 DMAAVFARFL NSGDDNTVNY DELNDATTNT TSSEASYGSE LSTSCLENRF EYPNLSDNFQ 180 HFVPSDHIQF QAEEVNQGFI TPDLPSFDDI IEDVFWSEDF DFSGFTWQTM SQAQEFDS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021760968.1	1e-107	dof zinc finger protein DOF1.2-like
Swissprot	Q9SVC5	2e-42	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	A0A0K9RZP9	9e-94	A0A0K9RZP9_SPIOL; Uncharacterized protein
STRING	XP_010680114.1	1e-101	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	5e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	AHYPO_022475-RA