PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022481-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 577aa    MW: 62904.8 Da    PI: 6.871
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022481-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.72.6e-28191244155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprl W+ eLH++Fv+av+qL G +kA Pk+ilelm+v+gLt+e+v+SHLQkYRl
  AHYPO_022481-RA 191 KPRLFWSVELHQKFVDAVNQL-GLDKAFPKKILELMNVEGLTREKVASHLQKYRL 244
                      79*******************.********************************8 PP
2Response_reg87.34.2e-29141221109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+ + ++l+ ++l+k +y +v+++ +++eal++l+e++  +D++++D+emp+mdG++ll+     e+++p+i+++a+++ + + + ++ 
  AHYPO_022481-RA  14 VLVVDDDVTCLKLMDNLLKKCQY-NVTTTNKAREALRMLHENRnrFDIVITDVEMPDMDGIRLLQLVGL-EMNVPVIMLSAYSDTKRVMQGIRN 105
                      89*********************.***************999889*******************87755.569********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l+Kp+ ++el +
  AHYPO_022481-RA 106 GACDYLVKPVRIQELQN 122
                      **************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.9E-1361573IPR017053Response regulator B-type, plant
SuperFamilySSF521722.13E-3511132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.6E-4211135No hitNo description
SMARTSM004488.7E-3212124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94813128IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-2614122IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.78E-2915127No hitNo description
PROSITE profilePS5129411.975188247IPR017930Myb domain
SuperFamilySSF466891.79E-19188248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-30189249IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23191244IPR006447Myb domain, plants
PfamPF002496.5E-8196243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSLQNERFPV GLRVLVVDDD VTCLKLMDNL LKKCQYNVTT TNKAREALRM LHENRNRFDI  60
VITDVEMPDM DGIRLLQLVG LEMNVPVIML SAYSDTKRVM QGIRNGACDY LVKPVRIQEL  120
QNIWQHVVRR NKSMPVQRIA GGSTRAPTAN VNQGAIHRGK SIEDSSGDDN NDYDEIEDSG  180
RETEDSSTQK KPRLFWSVEL HQKFVDAVNQ LGLDKAFPKK ILELMNVEGL TREKVASHLQ  240
KYRLYLKKVN SGPSAGNRLN GFGPEDAQIG PLGGGYGIYR SLAGPGRFPS LADQGGAMLS  300
RMNTAAGLSF RGLSPSPMLQ TSQLPLGFAA NPNTNLFQGV PTTIQMNKAS LPNPQTTAMM  360
FNGSPLFNAR DFGNQPSFVS QGALGIGGAI NNFTDSSGKG NWGTSVQPAT PSLSVRSNML  420
LTNAPSNVIV PANAPIQSLQ DDPLDVFSGI SSLDNSNNLG QQQMWQGQNQ DYIFNCNNSS  480
VSVTPIAGEN ARQGNNNLMG ASHFNHLEGA SSNRLQQNEV LKSNDGSNLK FDENFLLDDP  540
KVLCGSTQSN SEYLQDIVGS CLKKKEGETT AALKDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22187250164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687814.10.0PREDICTED: two-component response regulator ARR12
SwissprotA2X1N23e-99ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A0K9QUN40.0A0A0K9QUN4_SPIOL; Two-component response regulator
STRINGXP_010687814.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-90response regulator 12