PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022534-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 457aa    MW: 50481.8 Da    PI: 6.3281
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022534-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17173222155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  AHYPO_022534-RA 173 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 222
                      78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-15173230IPR016177DNA-binding domain
PfamPF008475.1E-9173222IPR001471AP2/ERF domain
PROSITE profilePS5103217.82174230IPR001471AP2/ERF domain
SMARTSM003805.0E-32174236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16174230IPR001471AP2/ERF domain
CDDcd000182.29E-11174232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MNMFDLNIDV VNNNFSFENH NKEGENNSMK DDEGSATNTE LSGTSSASSL VNAADESPIS  60
GTGEFDFFPK HRNDDHVPEF VTQQFFPINE ENDDKRTIDN VNYREMDKLR LGSSSSTTRS  120
SSSNSNNQWL NLSVLGSGSG SGTGSGSGLG TEQQNNVKQQ VKRSRRGPRS RSSQYRGVTF  180
YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFT IADYEEDMNQ  240
MQNLSKEDFV QILRRQSTGF SRGNSRAYDK AAVTNFEPNP HEGQIPIMHT RKEDDAQKLD  300
LNLGISITLD GPKGFYDRGV GESQTYPHPP LHFPNGKWPL NVNSANFPSG APPLYGQPMQ  360
SRQSTTMWSG LPPARSAPYE DKTGDQKVES LGTTTRLPNW SWYNQNEGQG GNGDGVGQPY  420
TIAASSGFSS LSTPTSSTTY PFTNLHNNLH HQSHGR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693092.11e-156PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X4
SwissprotQ9LVG22e-56TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A0K9QBF41e-150A0A0K9QBF4_SPIOL; Uncharacterized protein
STRINGXP_010693088.11e-151(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-51related to AP2.7