PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022668-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 341aa    MW: 38017.3 Da    PI: 7.5003
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022668-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-20177228256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg++ ta eAa+a+++a+ kl+g+
  AHYPO_022668-RA 177 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTYETAIEAARAYDRAAFKLRGA 228
                      8********.**********96655..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.76E-31176235No hitNo description
Gene3DG3DSA:3.30.730.103.5E-32176236IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-23177237IPR016177DNA-binding domain
SMARTSM003806.3E-36177241IPR001471AP2/ERF domain
PROSITE profilePS5103224.645177235IPR001471AP2/ERF domain
PfamPF008475.5E-14177227IPR001471AP2/ERF domain
PRINTSPR003672.5E-13178189IPR001471AP2/ERF domain
PRINTSPR003672.5E-13217237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASSNDSSAL EFIENHLFCE ISPIGSNFSF NFSFNNNFDA FKQESMTITK SDSLSSQSST  60
CSSSNSYFFG GEQQQQQRVS SGLIKEEQDL DFDFNFGVDI CKFEPNQQIK EDEHQITSSQ  120
TYSSGSKSKF GERKPSMKIS VPAQTKKFEV VKFVTESTQK VSTESTHRVE EEETRKHYRG  180
VRRRPWGKYA AEIRDPNKRG SRVWLGTYET AIEAARAYDR AAFKLRGAKA ILNFPLEVGK  240
LVEETASNTA SSGSVDGGKK RKMVVEKEDK IEVVENKKVK TKETTKTTSS SFEELGPLTP  300
SNWTAFWDLD VKSGNGIFTI PPLSPLSPIP SLGYSQLAVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-30176238163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021768012.11e-107ethylene-responsive transcription factor ERF104-like
TrEMBLA0A0K9RZH78e-95A0A0K9RZH7_SPIOL; Uncharacterized protein
STRINGXP_010677102.13e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-36ethylene responsive element binding factor 5