PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022698-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Trihelix

Protein Properties

Length: 851aa MW: 96291.4 Da PI: 6.6191

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022698-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.7	7.1e-09	162	221	17	76
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 +e+ +rgk ++ + +ev++++ + g++r +k+ kw+n+ ++++k+ e+e++r+ + + AHYPO_022698-RA 162 LESGGGRGKTRAEKDREVAEYLNKNGVNRDAKTAGTKWDNMLGEFRKVYEWERERARQLQ 221 5677789999*******************************************9954443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	4.58E-13	656	833	IPR011009	Protein kinase-like domain
CDD	cd00180	9.82E-11	656	834	No hit	No description
Gene3D	G3DSA:1.10.510.10	2.0E-5	683	838	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence Send to blast
MSETKDERET SSPSKDHDRE TITTQKFRGT PPAPLFLPPF DYEQVNSSSN IKRPRFATST 60 IHHQWKQQSP MGLKNPESSP SPSNPQTQLT SPDSSSSPSL SPIPSSSTGQ ENKQEQQQFR 120 KGKYVSPVWK PHEMLWLAKA WRAQYQGDGS GSGSGSGSSL GLESGGGRGK TRAEKDREVA 180 EYLNKNGVNR DAKTAGTKWD NMLGEFRKVY EWERERARQL QSYMHNTNNP RNPLVGFEPH 240 SSLPLSNTSG SPRMELRRIG RMRMAWEEWV SLWAEEGEYH RGRVKVQGSN LLNADELIYF 300 DESMVASSLE AYEDGPLKGF SVERFVPDFS ERIPFAIATD QPSIRSWDFQ DPTEYYLGCL 360 RAPPKTLPTL FELSWYLQEP PPEEFRLPLR KDIYRDLPQG RELFFTTSAN EPLDSKSFTI 420 DILSSLIRTF PSITASTSST RDSYIALWDD CINRVIAKFC PFEMVFTRKT PYMSSVSKSF 480 RDQWPNLTGM VKNFCLWRGE ETDQLRESQP YIDPSSSITQ KISWTYKGIP YILGYYAIGH 540 NVTFCALSPP SPSPSSSSSS QDHTQITRTD LYSLDLSNPS ERVKLLIPCW KIGIILASLA 600 EKCIKNNCQS DYERQDLGEG NIIEMTTNMT TRYYPNTRRW QTTKEIYTVL DQRVIPNVEH 660 MISYEEEELA LVFKPRGVKS KPKNMEHLVL ALKQVAKVLV ALHDLSFMHR DLSWEKVLMI 720 NKAASCSSSA TVSAMAEEVE EGWFVAGFEE AVGAPQINPL VEVGSGEERE KYAPEMSRGV 780 HGVKVDVYGI GYLIKTSEVK YEGRVGKQLK ELEGKCMDQN PEQRPTAADC YHHLLQIQSS 840 LSSAASSRCC *

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence Send to blast

MSETKDERET SSPSKDHDRE TITTQKFRGT PPAPLFLPPF DYEQVNSSSN IKRPRFATST  60
IHHQWKQQSP MGLKNPESSP SPSNPQTQLT SPDSSSSPSL SPIPSSSTGQ ENKQEQQQFR  120
KGKYVSPVWK PHEMLWLAKA WRAQYQGDGS GSGSGSGSSL GLESGGGRGK TRAEKDREVA  180
EYLNKNGVNR DAKTAGTKWD NMLGEFRKVY EWERERARQL QSYMHNTNNP RNPLVGFEPH  240
SSLPLSNTSG SPRMELRRIG RMRMAWEEWV SLWAEEGEYH RGRVKVQGSN LLNADELIYF  300
DESMVASSLE AYEDGPLKGF SVERFVPDFS ERIPFAIATD QPSIRSWDFQ DPTEYYLGCL  360
RAPPKTLPTL FELSWYLQEP PPEEFRLPLR KDIYRDLPQG RELFFTTSAN EPLDSKSFTI  420
DILSSLIRTF PSITASTSST RDSYIALWDD CINRVIAKFC PFEMVFTRKT PYMSSVSKSF  480
RDQWPNLTGM VKNFCLWRGE ETDQLRESQP YIDPSSSITQ KISWTYKGIP YILGYYAIGH  540
NVTFCALSPP SPSPSSSSSS QDHTQITRTD LYSLDLSNPS ERVKLLIPCW KIGIILASLA  600
EKCIKNNCQS DYERQDLGEG NIIEMTTNMT TRYYPNTRRW QTTKEIYTVL DQRVIPNVEH  660
MISYEEEELA LVFKPRGVKS KPKNMEHLVL ALKQVAKVLV ALHDLSFMHR DLSWEKVLMI  720
NKAASCSSSA TVSAMAEEVE EGWFVAGFEE AVGAPQINPL VEVGSGEERE KYAPEMSRGV  780
HGVKVDVYGI GYLIKTSEVK YEGRVGKQLK ELEGKCMDQN PEQRPTAADC YHHLLQIQSS  840
LSSAASSRCC *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106499.1	0.0	PREDICTED: uncharacterized protein LOC104899764 isoform X2
TrEMBL	A0A0J8BFY7	0.0	A0A0J8BFY7_BETVU; Uncharacterized protein
STRING	XP_010693644.1	0.0	(Beta vulgaris)

Link Out ? help Back to Top
Phytozome	AHYPO_022698-RA